2018

Pdf Export Search A Neural Layered Model for Nested Named Entity Recognition
[N18-1131]: Meizhi Ju | Makoto Miwa | Sophia Ananiadou

Pdf Export Search Paths for uncertainty: Exploring the intricacies of uncertainty identification for news
[W18-1302]: Chrysoula Zerva | Sophia Ananiadou

Pdf Export Search Proceedings of the BioNLP 2018 workshop
[W18-2300]: Dina Demner-Fushman | Kevin Bretonnel Cohen | Sophia Ananiadou | Junichi Tsujii

Pdf Export Search Investigating Domain-Specific Information for Neural Coreference Resolution on Biomedical Texts
[W18-2324]: Long Trieu | Nhung Nguyen | Makoto Miwa | Sophia Ananiadou

Pdf Export Search A Walk-based Model on Entity Graphs for Relation Extraction
[P18-2014]: Fenia Christopoulou | Makoto Miwa | Sophia Ananiadou

2017

Pdf Export Search Distributed Document and Phrase Co-embeddings for Descriptive Clustering
[E17-1093]: Motoki Sato | Austin J. Brockmeier | Georgios Kontonatsios | Tingting Mu | John Y. Goulermas | Jun'ichi Tsujii | Sophia Ananiadou

Pdf Export Search BioNLP 2017
[W17-2300]: Kevin Bretonnel Cohen | Dina Demner-Fushman | Sophia Ananiadou | Junichi Tsujii

Pdf Export Search Proactive Learning for Named Entity Recognition
[W17-2314]: Maolin Li | Nhung Nguyen | Sophia Ananiadou

2016

Pdf Export Search NaCTeM at SemEval-2016 Task 1: Inferring sentence-level semantic similarity from an ensemble of complementary lexical and sentence-level features
[S16-1093]: Piotr Przybyła | Nhung T. H. Nguyen | Matthew Shardlow | Georgios Kontonatsios | Sophia Ananiadou

Pdf Export Search Proceedings of the 15th Workshop on Biomedical Natural Language Processing
[W16-2900]: Kevin Bretonnel Cohen | Dina Demner-Fushman | Sophia Ananiadou | Jun-ichi Tsujii

Pdf Export Search Learning to recognise named entities in tweets by exploiting weakly labelled data
[W16-3921]: Kurt Junshean Espinosa | Riza Theresa Batista-Navarro | Sophia Ananiadou

Pdf Export Search Proceedings of the Fifth Workshop on Building and Evaluating Resources for Biomedical Text Mining (BioTxtM2016)
[W16-5100]: Sophia Ananiadou | Riza Batista-Navarro | Kevin Bretonnel Cohen | Dina Demner-Fushman | Paul Thompson

2015

Pdf Export Search Proceedings of BioNLP 15
[W15-3800]: Kevin Bretonnel Cohen | Dina Demner-Fushman | Sophia Ananiadou | Jun-ichi Tsujii

Pdf Export Search Event Extraction in pieces:Tackling the partial event identification problem on unseen corpora
[W15-3804]: Chrysoula Zerva | Sophia Ananiadou

2014

Pdf Export Search Comparable Study of Event Extraction in Newswire and Biomedical Domains
[C14-1214]: Makoto Miwa | Paul Thompson | Ioannis Korkontzelos | Sophia Ananiadou

Pdf Export Search Combining String and Context Similarity for Bilingual Term Alignment from Comparable Corpora
[D14-1177]: Georgios Kontonatsios | Ioannis Korkontzelos | Jun'ichi Tsujii | Sophia Ananiadou

Pdf Export Search Using a Random Forest Classifier to Compile Bilingual Dictionaries of Technical Terms from Comparable Corpora
[E14-4022]: Georgios Kontonatsios | Ioannis Korkontzelos | Jun'ichi Tsujii | Sophia Ananiadou

Pdf Export Search Interoperability and Customisation of Annotation Schemata in Argo
[L14-1065]: Rafal Rak | Jacob Carter | Andrew Rowley | Riza Theresa Batista-Navarro | Sophia Ananiadou

Pdf Export Search The Meta-knowledge of Causality in Biomedical Scientific Discourse
[L14-1221]: Claudiu Mihăilă | Sophia Ananiadou

Pdf Export Search The Strategic Impact of META-NET on the Regional, National and International Level
[L14-1350]: Georg Rehm | Hans Uszkoreit | Sophia Ananiadou | Núria Bel | Audroné Bielevičiené | Lars Borin | António Branco | Gerhard Budin | Nicoletta Calzolari | Walter Daelemans | Radovan Garabík | Marko Grobelnik | Carmen Garcia-Mateo | Josef van Genabith | Jan Hajic | Inma Hernaez | John Judge | Svetla Koeva | Simon Krek | Cvetana Krstev | Krister Linden | Bernardo Magnini | Joseph Mariani | John McNaught | Maite Melero | Monica Monachini | Asuncion Moreno | Jan Odijk | Maciej Ogrodniczuk | Piotr Pezik | Stelios Piperidis | Adam Przepiórkowski | Eiríkur Rögnvaldsson | Michael Rosner | Bolette Pedersen | Inguna Skadina | Koenraad De Smedt | Marko Tadić | Paul Thompson | Dan Tufiș | Tamás Váradi | Andrejs Vasiļjevs | Kadri Vider | Jolanta Zabarskaite

Pdf Export Search Locating Requests among Open Source Software Communication Messages
[L14-1413]: Ioannis Korkontzelos | Sophia Ananiadou

Pdf Export Search Keynote: Supporting evidence-based medicine using text mining
[W14-1101]: Sophia Ananiadou

Pdf Export Search Building a semantically annotated corpus for congestive heart and renal failure from clinical records and the literature
[W14-1110]: Noha Alnazzawi | Paul Thompson | Sophia Ananiadou

Pdf Export Search Proceedings of BioNLP 2014
[W14-3400]: Kevin Cohen | Dina Demner-Fushman | Sophia Ananiadou | Jun-ichi Tsujii

2013

Pdf Export Search What causes a causal relation? Detecting Causal Triggers in Biomedical Scientific Discourse
[P13-3006]: Claudiu Mihăilă | Sophia Ananiadou

Pdf Export Search Extending an interoperable platform to facilitate the creation of multilingual and multimodal NLP applications
[P13-4008]: Georgios Kontonatsios | Paul Thompson | Riza Theresa Batista-Navarro | Claudiu Mihăilă | Ioannis Korkontzelos | Sophia Ananiadou

Pdf Export Search Development and Analysis of NLP Pipelines in Argo
[P13-4020]: Rafal Rak | Andrew Rowley | Jacob Carter | Sophia Ananiadou

Pdf Export Search Proceedings of the 2013 Workshop on Biomedical Natural Language Processing
[W13-1900]: Kevin Bretonnel Cohen | Dina Demner-Fushman | Sophia Ananiadou | John Pestian | Jun’ichi Tsujii

Pdf Export Search Overview of the Cancer Genetics (CG) task of BioNLP Shared Task 2013
[W13-2008]: Sampo Pyysalo | Tomoko Ohta | Sophia Ananiadou

Pdf Export Search Overview of the Pathway Curation (PC) task of BioNLP Shared Task 2013
[W13-2009]: Tomoko Ohta | Sampo Pyysalo | Rafal Rak | Andrew Rowley | Hong-Woo Chun | Sung-Jae Jung | Sung-Pil Choi | Sophia Ananiadou | Jun'ichi Tsujii

Pdf Export Search NaCTeM EventMine for BioNLP 2013 CG and PC tasks
[W13-2012]: Makoto Miwa | Sophia Ananiadou

Pdf Export Search Towards a Better Understanding of Discourse: Integrating Multiple Discourse Annotation Perspectives Using UIMA
[W13-2310]: Claudiu Mihăilă | Georgios Kontonatsios | Riza Theresa Batista-Navarro | Paul Thompson | Ioannis Korkontzelos | Sophia Ananiadou

Pdf Export Search Making UIMA Truly Interoperable with SPARQL
[W13-2311]: Rafal Rak | Sophia Ananiadou

Pdf Export Search Using a Random Forest Classifier to recognise translations of biomedical terms across languages
[W13-2512]: Georgios Kontonatsios | Ioannis Korkontzelos | Sophia Ananiadou | Jun’ichi Tsujii

2012

Pdf Export Search brat: a Web-based Tool for NLP-Assisted Text Annotation
[E12-2021]: Pontus Stenetorp | Sampo Pyysalo | Goran Topić | Tomoko Ohta | Sophia Ananiadou | Jun’ichi Tsujii

Pdf Export Search Biomedical Chinese-English CLIR Using an Extended CMeSH Resource to Expand Queries
[L12-1149]: Xinkai Wang | Paul Thompson | Jun'ichi Tsujii | Sophia Ananiadou

Pdf Export Search Identification of Manner in Bio-Events
[L12-1485]: Raheel Nawaz | Paul Thompson | Sophia Ananiadou

Pdf Export Search Collaborative Development and Evaluation of Text-processing Workflows in a UIMA-supported Web-based Workbench
[L12-1572]: Rafal Rak | Andrew Rowley | Sophia Ananiadou

Pdf Export Search A data and analysis resource for an experiment in text mining a collection of micro-­blogs on a political topic.
[L12-1629]: William Black | Rob Procter | Steven Gray | Sophia Ananiadou

Pdf Export Search Building Trainable Taggers in a Web-based, UIMA-Supported NLP Workbench
[P12-3021]: Rafal Rak | BalaKrishna Kolluru | Sophia Ananiadou

Pdf Export Search BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
[W12-2400]: Kevin B. Cohen | Dina Demner-Fushman | Sophia Ananiadou | Bonnie Webber | Jun'ichi Tsujii | John Pestian

Pdf Export Search PubMed-Scale Event Extraction for Post-Translational Modifications, Epigenetics and Protein Structural Relations
[W12-2410]: Jari Björne | Sofie Van Landeghem | Sampo Pyysalo | Tomoko Ohta | Filip Ginter | Yves Van de Peer | Sophia Ananiadou | Tapio Salakoski

Pdf Export Search New Resources and Perspectives for Biomedical Event Extraction
[W12-2412]: Sampo Pyysalo | Pontus Stenetorp | Tomoko Ohta | Jin-Dong Kim | Sophia Ananiadou

Pdf Export Search Bridging the Gap Between Scope-based and Event-based Negation/Speculation Annotations: A Bridge Not Too Far
[W12-3806]: Pontus Stenetorp | Sampo Pyysalo | Tomoko Ohta | Sophia Ananiadou | Jun'ichi Tsujii

Pdf Export Search Open-domain Anatomical Entity Mention Detection
[W12-4304]: Tomoko Ohta | Sampo Pyysalo | Jun'ichi Tsujii | Sophia Ananiadou

Pdf Export Search A three-way perspective on scientific discourse annotation for knowledge extraction
[W12-4305]: Maria Liakata | Paul Thompson | Anita de Waard | Raheel Nawaz | Henk Pander Maat | Sophia Ananiadou

2011

Pdf Export Search Proceedings of BioNLP 2011 Workshop
[W11-0200]: Kevin Bretonnel Cohen | Dina Demner-Fushman | Sophia Ananiadou | John Pestian | Jun'ichi Tsujii | Bonnie Webber

Pdf Export Search Building a Coreference-Annotated Corpus from the Domain of Biochemistry
[W11-0210]: Riza Theresa Batista-Navarro | Sophia Ananiadou

Pdf Export Search Enrichment and Structuring of Archival Description Metadata
[W11-1507]: Kalliopi Zervanou | Ioannis Korkontzelos | Antal van den Bosch | Sophia Ananiadou

Pdf Export Search Overview of the Infectious Diseases (ID) task of BioNLP Shared Task 2011
[W11-1804]: Sampo Pyysalo | Tomoko Ohta | Rafal Rak | Dan Sullivan | Chunhong Mao | Chunxia Wang | Bruno Sobral | Jun'ichi Tsujii | Sophia Ananiadou

Pdf Export Search Promoting Interoperability of Resources in META-SHARE
[W11-3307]: Paul Thompson | Yoshinobu Kano | John McNaught | Steve Pettifer | Teresa Attwood | John Keane | Sophia Ananiadou

2010

Pdf Export Search Imbalanced Classification Using Dictionary-based Prototypes and Hierarchical Decision Rules for Entity Sense Disambiguation
[C10-2098]: Tingting Mu | Xinglong Wang | Jun’ichi Tsujii | Sophia Ananiadou

Pdf Export Search Evaluating a Text Mining Based Educational Search Portal
[L10-1076]: Sophia Ananiadou | John McNaught | James Thomas | Mark Rickinson | Sandy Oliver

Pdf Export Search Meta-Knowledge Annotation of Bio-Events
[L10-1210]: Raheel Nawaz | Paul Thompson | John McNaught | Sophia Ananiadou

Pdf Export Search U-Compare: An Integrated Language Resource Evaluation Platform Including a Comprehensive UIMA Resource Library
[L10-1211]: Yoshinobu Kano | Ruben Dorado | Luke McCrohon | Sophia Ananiadou | Jun'ichi Tsujii

Pdf Export Search Proceedings of the 2010 Workshop on Biomedical Natural Language Processing
[W10-1900]: K. Bretonnel Cohen | Dina Demner-Fushman | Sophia Ananiadou | John Pestian | Jun’ichi Tsujii | Bonnie Webber

Pdf Export Search Towards Event Extraction from Full Texts on Infectious Diseases
[W10-1919]: Sampo Pyysalo | Tomoko Ohta | Han-Cheol Cho | Dan Sullivan | Chunhong Mao | Bruno Sobral | Jun’ichi Tsujii | Sophia Ananiadou

Pdf Export Search Evaluating a meta-knowledge annotation scheme for bio-events
[W10-3112]: Raheel Nawaz | Paul Thompson | Sophia Ananiadou

2009

Pdf Export Search Classifying Relations for Biomedical Named Entity Disambiguation
[D09-1157]: Xinglong Wang | Jun’ichi Tsujii | Sophia Ananiadou

Pdf Export Search Fast Full Parsing by Linear-Chain Conditional Random Fields
[E09-1090]: Yoshimasa Tsuruoka | Jun'ichi Tsujii | Sophia Ananiadou

Pdf Export Search Three BioNLP Tools Powered by a Biological Lexicon
[E09-2016]: Yutaka Sasaki | Paul Thompson | John McNaught | Sophia Ananiadou

Pdf Export Search Stochastic Gradient Descent Training for L1-regularized Log-linear Models with Cumulative Penalty
[P09-1054]: Yoshimasa Tsuruoka | Jun’ichi Tsujii | Sophia Ananiadou

Pdf Export Search Proceedings of the BioNLP 2009 Workshop
[W09-1300]: K. Bretonnel Cohen | Dina Demner-Fushman | Sophia Ananiadou | John Pestian | Jun’ichi Tsujii | Bonnie Webber

Pdf Export Search Integrated NLP Evaluation System for Pluggable Evaluation Metrics with Extensive Interoperable Toolkit
[W09-1504]: Yoshinobu Kano | Luke McCrohon | Sophia Ananiadou | Jun’ichi Tsujii

2008

Pdf Export Search A Discriminative Alignment Model for Abbreviation Recognition
[C08-1083]: Naoaki Okazaki | Sophia Ananiadou | Jun'ichi Tsujii

Pdf Export Search Event Frame Extraction Based on a Gene Regulation Corpus
[C08-1096]: Yutaka Sasaki | Paul Thompson | Philip Cotter | John McNaught | Sophia Ananiadou

Pdf Export Search A Discriminative Candidate Generator for String Transformations
[D08-1047]: Naoaki Okazaki | Yoshimasa Tsuruoka | Sophia Ananiadou | Jun’ichi Tsujii

Pdf Export Search Identifying Sections in Scientific Abstracts using Conditional Random Fields
[I08-1050]: Kenji Hirohata | Naoaki Okazaki | Sophia Ananiadou | Mitsuru Ishizuka

Pdf Export Search Towards Data and Goal Oriented Analysis: Tool Inter-operability and Combinatorial Comparison
[I08-2122]: Yoshinobu Kano | Ngan Nguyen | Rune Sætre | Kazuhiro Yoshida | Keiichiro Fukamachi | Yusuke Miyao | Yoshimasa Tsuruoka | Sophia Ananiadou | Jun'ichi Tsujii

Pdf Export Search Clustering Related Terms with Definitions
[L08-1070]: Scott Piao | John McNaught | Sophia Ananiadou

Pdf Export Search Building a Bio-Event Annotated Corpus for the Acquisition of Semantic Frames from Biomedical Corpora
[L08-1231]: Paul Thompson | Philip Cotter | John McNaught | Sophia Ananiadou | Simonetta Montemagni | Andrea Trabucco | Giulia Venturi

Pdf Export Search Connecting Text Mining and Pathways using the PathText Resource
[L08-1302]: Rune Sætre | Brian Kemper | Kanae Oda | Naoaki Okazaki | Yukiko Matsuoka | Norihiro Kikuchi | Hiroaki Kitano | Yoshimasa Tsuruoka | Sophia Ananiadou | Jun’ichi Tsujii

Pdf Export Search Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing
[W08-0600]: Dina Demner-Fushman | Sophia Ananiadou | Kevin Bretonnel Cohen | John Pestian | Jun'ichi Tsujii | Bonnie Webber

Pdf Export Search Accelerating the Annotation of Sparse Named Entities by Dynamic Sentence Selection
[W08-0605]: Yoshimasa Tsuruoka | Jun'ichi Tsujii | Sophia Ananiadou

Pdf Export Search How to Make the Most of NE Dictionaries in Statistical NER
[W08-0609]: Yutaka Sasaki | Yoshimasa Tsuruoka | John McNaught | Sophia Ananiadou

2007

Pdf Export Search Text Mining Techniques for Building a Biolexicon
[U07-1001]: Sophia Ananiadou

Pdf Export Search An Annotation Type System for a Data-Driven NLP Pipeline
[W07-1505]: Udo Hahn | Ekaterina Buyko | Katrin Tomanek | Scott Piao | John McNaught | Yoshimasa Tsuruoka | Sophia Ananiadou

2006

Pdf Export Search A Term Recognition Approach to Acronym Recognition
[P06-2083]: Naoaki Okazaki | Sophia Ananiadou

2005

Pdf Export Search A Machine Learning Approach to Acronym Generation
[W05-1304]: Yoshimasa Tsuruoka | Sophia Ananiadou | Jun'ichi Tsujii

2004

Pdf Export Search Enhancing automatic term recognition through recognition of variation
[C04-1087]: Goran Nenadic | Sophia Ananiadou | John McNaught

Pdf Export Search Design and Implementation of a Terminology-based Literature Mining and Knowledge Structuring System
[W04-1812]: Hideki Mima | Sophia Ananiadou | Katsumori Matsushima

2003

Pdf Export Search An Integrated Term-Based Corpus Query System
[E03-1077]: Irena Spasic | Goran Nenadic | Kostas Manios | Sophia Ananiadou

Pdf Export Search Using Domain-Specific Verbs for Term Classification
[W03-1303]: Irena Spasic | Goran Nenadic | Sophia Ananiadou

Pdf Export Search Selecting Text Features for Gene Name Classification: from Documents to Terms
[W03-1316]: Goran Nenadic | Simon Rice | Irena Spasic | Sophia Ananiadou | Benjamin Stapley

Pdf Export Search Morpho-syntactic Clues for Terminological Processing in Serbian
[W03-2911]: Goran Nenadić | Irena Spasić | Sophia Ananiadou

2002

Pdf Export Search A Methodology for Terminology-based Knowledge Acquisition and Integration
[C02-1083]: Hideki Mima | Sophia Ananiadou | Goran Nenadic | Jun-Ichi Tsujii

Pdf Export Search Tuning Context Features with Genetic Algorithms.
[L02-1239]: Irena Spasić | Goran Nenadić | Sophia Ananiadou

Pdf Export Search Automatic Acronym Acquisition and Term Variation Management within Domain-Specific Texts.
[L02-1240]: Goran Nenadić | Irena Spasić | Sophia Ananiadou

Pdf Export Search Automatic Discovery of Term Similarities Using Pattern Mining
[W02-1408]: Goran Nenadi? | Irena Spasi? | Sophia Ananiadou

2000

Pdf Export Search Identifying Terms by their Family and Friends
[C00-1077]: Diana Maynard | Sophia Ananiadou

Pdf Export Search Creating and Using Domain-specific Ontologies for Terminological Applications
[L00-1017]: Diana Maynard | Sophia Ananiadou

1996

Pdf Export Search Extracting Nested Collocations
[C96-1009]: Katerina T. Frantzi | Sophia Ananiadou

1994

Pdf Export Search A METHODOLOGY FOR AUTOMATIC TERM RECOGNITION
[C94-2167]: Sophia Ananiadou