2018

Pdf Export Search Biomedical Event Extraction Using Convolutional Neural Networks and Dependency Parsing
[W18-2311]: Jari Björne | Tapio Salakoski

2017

Pdf Export Search End-to-End System for Bacteria Habitat Extraction
[W17-2310]: Farrokh Mehryary | Kai Hakala | Suwisa Kaewphan | Jari Björne | Tapio Salakoski | Filip Ginter

2016

Pdf Export Search UTU at SemEval-2016 Task 10: Binary Classification for Expression Detection (BCED)
[S16-1142]: Jari Björne | Tapio Salakoski

Pdf Export Search Deep Learning with Minimal Training Data: TurkuNLP Entry in the BioNLP Shared Task 2016
[W16-3009]: Farrokh Mehryary | Jari Björne | Sampo Pyysalo | Tapio Salakoski | Filip Ginter

2013

Pdf Export Search UTurku: Drug Named Entity Recognition and Drug-Drug Interaction Extraction Using SVM Classification and Domain Knowledge
[S13-2108]: Jari Björne | Suwisa Kaewphan | Tapio Salakoski

Pdf Export Search TEES 2.1: Automated Annotation Scheme Learning in the BioNLP 2013 Shared Task
[W13-2003]: Jari Björne | Tapio Salakoski

2012

Pdf Export Search PubMed-Scale Event Extraction for Post-Translational Modifications, Epigenetics and Protein Structural Relations
[W12-2410]: Jari Björne | Sofie Van Landeghem | Sampo Pyysalo | Tomoko Ohta | Filip Ginter | Yves Van de Peer | Sophia Ananiadou | Tapio Salakoski

2011

Pdf Export Search Generalizing Biomedical Event Extraction
[W11-1828]: Jari Björne | Tapio Salakoski

2010

Pdf Export Search Scaling up Biomedical Event Extraction to the Entire PubMed
[W10-1904]: Jari Björne | Filip Ginter | Sampo Pyysalo | Jun’ichi Tsujii | Tapio Salakoski

Pdf Export Search Reconstruction of Semantic Relationships from Their Projections in Biomolecular Domain
[W10-1914]: Juho Heimonen | Jari Björne | Tapio Salakoski

2009

Pdf Export Search Extracting Complex Biological Events with Rich Graph-Based Feature Sets
[W09-1402]: Jari Björne | Juho Heimonen | Filip Ginter | Antti Airola | Tapio Pahikkala | Tapio Salakoski

Pdf Export Search Learning to Extract Biological Event and Relation Graphs
[W09-4605]: Jari Björne | Filip Ginter | Juho Heimonen | Sampo Pyysalo | Tapio Salakoski

2008

Pdf Export Search A Graph Kernel for Protein-Protein Interaction Extraction
[W08-0601]: Antti Airola | Sampo Pyysalo | Jari Björne | Tapio Pahikkala | Filip Ginter | Tapio Salakoski